5FEX image
Deposition Date 2015-12-17
Release Date 2016-04-06
Last Version Date 2024-01-10
Entry Detail
PDB ID:
5FEX
Keywords:
Title:
HydE from T. maritima in complex with Se-adenosyl-L-selenocysteine (tfinal of the reaction)
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.32 Å
R-Value Free:
0.14
R-Value Work:
0.11
R-Value Observed:
0.11
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:[FeFe] hydrogenase maturase subunit HydE
Gene (Uniprot):THEMA_07990, Tmari_1274
Chain IDs:A
Chain Length:358
Number of Molecules:1
Biological Source:Thermotoga maritima
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
OTY A TYR modified residue
Primary Citation
Carbon-sulfur bond-forming reaction catalysed by the radical SAM enzyme HydE.
Nat.Chem. 8 491 500 (2016)
PMID: 27102684 DOI: 10.1038/nchem.2490

Abstact

Carbon-sulfur bond formation at aliphatic positions is a challenging reaction that is performed efficiently by radical S-adenosyl-L-methionine (SAM) enzymes. Here we report that 1,3-thiazolidines can act as ligands and substrates for the radical SAM enzyme HydE, which is involved in the assembly of the active site of [FeFe]-hydrogenase. Using X-ray crystallography, in vitro assays and NMR spectroscopy we identified a radical-based reaction mechanism that is best described as the formation of a C-centred radical that concomitantly attacks the sulfur atom of a thioether. To the best of our knowledge, this is the first example of a radical SAM enzyme that reacts directly on a sulfur atom instead of abstracting a hydrogen atom. Using theoretical calculations based on our high-resolution structures we followed the evolution of the electronic structure from SAM through to the formation of S-adenosyl-L-cysteine. Our results suggest that, at least in this case, the widely proposed and highly reactive 5'-deoxyadenosyl radical species that triggers the reaction in radical SAM enzymes is not an isolable intermediate.

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Primary Citation of related structures
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