5FER image
Deposition Date 2015-12-17
Release Date 2016-05-18
Last Version Date 2024-05-08
Entry Detail
PDB ID:
5FER
Keywords:
Title:
Complex of TRIM25 RING with UbcH5-Ub
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Bos taurus (Taxon ID: 9913)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.34 Å
R-Value Free:
0.27
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:E3 ubiquitin/ISG15 ligase TRIM25
Gene (Uniprot):TRIM25
Chain IDs:A, D
Chain Length:85
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ubiquitin-conjugating enzyme E2 D1
Gene (Uniprot):UBE2D1
Chain IDs:B, E
Chain Length:150
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ubiquitin-40S ribosomal protein S27a
Gene (Uniprot):RPS27A
Chain IDs:C, F
Chain Length:76
Number of Molecules:2
Biological Source:Bos taurus
Ligand Molecules
Primary Citation
Functional role of TRIM E3 ligase oligomerization and regulation of catalytic activity.
Embo J. 35 1204 1218 (2016)
PMID: 27154206 DOI: 10.15252/embj.201593741

Abstact

TRIM E3 ubiquitin ligases regulate a wide variety of cellular processes and are particularly important during innate immune signalling events. They are characterized by a conserved tripartite motif in their N-terminal portion which comprises a canonical RING domain, one or two B-box domains and a coiled-coil region that mediates ligase dimerization. Self-association via the coiled-coil has been suggested to be crucial for catalytic activity of TRIMs; however, the precise molecular mechanism underlying this observation remains elusive. Here, we provide a detailed characterization of the TRIM ligases TRIM25 and TRIM32 and show how their oligomeric state is linked to catalytic activity. The crystal structure of a complex between the TRIM25 RING domain and an ubiquitin-loaded E2 identifies the structural and mechanistic features that promote a closed E2~Ub conformation to activate the thioester for ubiquitin transfer allowing us to propose a model for the regulation of activity in the full-length protein. Our data reveal an unexpected diversity in the self-association mechanism of TRIMs that might be crucial for their biological function.

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Disease

Primary Citation of related structures
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