ISDA

Deposition Date 2015-12-16

Release Date 2016-06-08

Last Version Date 2024-01-10

Entry Detail

PDB ID:

5FDP

Keywords:

TRANSFERASE

Title:

Structure of DDR1 receptor tyrosine kinase in complex with D2099 inhibitor at 2.25 Angstroms resolution.

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Spodoptera frugiperda

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.25 Å

R-Value Free:

0.26

R-Value Work:

0.18

R-Value Observed:

0.19

Space Group:

P 21 21 21

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Epithelial discoidin domain-containing receptor 1
Gene (Uniprot):DDR1
Chain IDs:A
Chain Length:337
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q08345 Pfam ID:PF07714 EC:2.7.10.1

Ligand Molecules

5WR

EDO

PEG

Primary Citation

Structure-Based Design of Tetrahydroisoquinoline-7-carboxamides as Selective Discoidin Domain Receptor 1 (DDR1) Inhibitors.

Wang, Z, Bian, H, Bartual, S.G, Du, W, Luo, J, Zhao, H, Zhang, S, Mo, C, Zhou, Y, Xu, Y, Tu, Z, Ren, X, Lu, X, Brekken, R.A, Yao, L, Bullock, A.N, Su, J, Ding, K.Show

J.Med.Chem. 59 5911 5916 (2016)

PMID: 27219676 DOI: 10.1021/acs.jmedchem.6b00140

Abstact

The structure-based design of 1, 2, 3, 4-tetrahydroisoquinoline derivatives as selective DDR1 inhibitors is reported. One of the representative compounds, 6j, binds to DDR1 with a Kd value of 4.7 nM and suppresses its kinase activity with an IC50 value of 9.4 nM, but it is significantly less potent for a panel of 400 nonmutated kinases. 6j also demonstrated reasonable pharmacokinetic properties and a promising oral therapeutic effect in a bleomycin-induced mouse pulmonary fibrosis model.

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Primary Citation of related structures