5FAE image
Deposition Date 2015-12-11
Release Date 2016-10-05
Last Version Date 2024-11-06
Entry Detail
PDB ID:
5FAE
Title:
N184K pathological variant of gelsolin domain 2 (trigonal form)
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.70 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 31 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Gelsolin
Gene (Uniprot):GSN
Mutagens:N184K
Chain IDs:A
Chain Length:119
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Molecular basis of a novel renal amyloidosis due to N184K gelsolin variant.
Sci Rep 6 33463 33463 (2016)
PMID: 27633054 DOI: 10.1038/srep33463

Abstact

Mutations in gelsolin are responsible for a systemic amyloidosis first described in 1969. Until recently, the disease was associated with two substitutions of the same residue, leading to the loss of the calcium binding site. Novel interest arose in 2014 when the N184K variant of the protein was identified as the etiological agent of a novel kidney-localized amyloidosis. Here we provide a first rationale for N184K pathogenicity. We show that the mutation induces a destabilization of gelsolin second domain, without compromising its calcium binding capacity. X-ray data combined with molecular dynamics simulations demonstrates that the primary source of the destabilization is a loss of connectivity in proximity of the metal. Such rearrangement of the H-bond network does not have a major impact on the overall fold of the domain, nevertheless, it increases the flexibility of a stretch of the protein, which is consequently processed by furin protease. Overall our data suggest that the N184K variant is subjected to the same aberrant proteolytic events responsible for the formation of amyloidogenic fragments in the previously characterized mutants. At the same time our data suggest that a broader number of mutations, unrelated to the metal binding site, can lead to a pathogenic phenotype.

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Primary Citation of related structures
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