5F8Q image
Deposition Date 2015-12-09
Release Date 2016-01-20
Last Version Date 2024-11-06
Entry Detail
PDB ID:
5F8Q
Keywords:
Title:
Blood group antigen binding adhesin BabA of Helicobacter pylori strain S831 in complex with Nanobody Nb-ER19
Biological Source:
Source Organism:
Helicobacter pylori (Taxon ID: 210)
Lama glama (Taxon ID: 9844)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.59 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Adhesin binding fucosylated histo-blood group antigen,Adhesin,Adhesin binding fucosylated histo-blood group antigen
Gene (Uniprot):babA2, babA
Chain IDs:A, C (auth: B)
Chain Length:466
Number of Molecules:2
Biological Source:Helicobacter pylori
Polymer Type:polypeptide(L)
Molecule:Nanobody Nb-ER19
Chain IDs:B (auth: C), D
Chain Length:120
Number of Molecules:2
Biological Source:Lama glama
Primary Citation

Abstact

The Helicobacter pylori adhesin BabA binds mucosal ABO/Le(b) blood group (bg) carbohydrates. BabA facilitates bacterial attachment to gastric surfaces, increasing strain virulence and forming a recognized risk factor for peptic ulcers and gastric cancer. High sequence variation causes BabA functional diversity, but the underlying structural-molecular determinants are unknown. We generated X-ray structures of representative BabA isoforms that reveal a polymorphic, three-pronged Le(b) binding site. Two diversity loops, DL1 and DL2, provide adaptive control to binding affinity, notably ABO versus O bg preference. H. pylori strains can switch bg preference with single DL1 amino acid substitutions, and can coexpress functionally divergent BabA isoforms. The anchor point for receptor binding is the embrace of an ABO fucose residue by a disulfide-clasped loop, which is inactivated by reduction. Treatment with the redox-active pharmaceutic N-acetylcysteine lowers gastric mucosal neutrophil infiltration in H. pylori-infected Le(b)-expressing mice, providing perspectives on possible H. pylori eradication therapies.

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Primary Citation of related structures