5F7N image
Entry Detail
PDB ID:
5F7N
Keywords:
Title:
Blood group antigen binding adhesin BabA of Helicobacter pylori strain 17875 in complex with blood group A Lewis b pentasaccharide
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2015-12-08
Release Date:
2016-01-20
Method Details:
Experimental Method:
Resolution:
2.28 Å
R-Value Free:
0.19
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Adhesin binding fucosylated histo-blood group antigen
Chain IDs:A, B
Chain Length:466
Number of Molecules:2
Biological Source:Helicobacter pylori
Polymer Type:polypeptide(L)
Description:Nanobody Nb-ER19
Chain IDs:C, D
Chain Length:120
Number of Molecules:2
Biological Source:Vicugna pacos
Peptide-like Molecules
PRD_900126
Primary Citation

Abstact

The Helicobacter pylori adhesin BabA binds mucosal ABO/Le(b) blood group (bg) carbohydrates. BabA facilitates bacterial attachment to gastric surfaces, increasing strain virulence and forming a recognized risk factor for peptic ulcers and gastric cancer. High sequence variation causes BabA functional diversity, but the underlying structural-molecular determinants are unknown. We generated X-ray structures of representative BabA isoforms that reveal a polymorphic, three-pronged Le(b) binding site. Two diversity loops, DL1 and DL2, provide adaptive control to binding affinity, notably ABO versus O bg preference. H. pylori strains can switch bg preference with single DL1 amino acid substitutions, and can coexpress functionally divergent BabA isoforms. The anchor point for receptor binding is the embrace of an ABO fucose residue by a disulfide-clasped loop, which is inactivated by reduction. Treatment with the redox-active pharmaceutic N-acetylcysteine lowers gastric mucosal neutrophil infiltration in H. pylori-infected Le(b)-expressing mice, providing perspectives on possible H. pylori eradication therapies.

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Primary Citation of related structures