5F7L image
Entry Detail
PDB ID:
5F7L
Keywords:
Title:
Blood group antigen binding adhesin BabA of Helicobacter pylori strain 17875 in complex with Nanobody Nb-ER14
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2015-12-08
Release Date:
2016-01-20
Method Details:
Experimental Method:
Resolution:
2.74 Å
R-Value Free:
0.26
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 2 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Adhesin binding fucosylated histo-blood group antigen
Chain IDs:A, C
Chain Length:466
Number of Molecules:2
Biological Source:Helicobacter pylori
Polymer Type:polypeptide(L)
Description:Nanobody Nb-ER14
Chain IDs:B, D
Chain Length:129
Number of Molecules:2
Biological Source:Lama glama
Ligand Molecules
Primary Citation

Abstact

The Helicobacter pylori adhesin BabA binds mucosal ABO/Le(b) blood group (bg) carbohydrates. BabA facilitates bacterial attachment to gastric surfaces, increasing strain virulence and forming a recognized risk factor for peptic ulcers and gastric cancer. High sequence variation causes BabA functional diversity, but the underlying structural-molecular determinants are unknown. We generated X-ray structures of representative BabA isoforms that reveal a polymorphic, three-pronged Le(b) binding site. Two diversity loops, DL1 and DL2, provide adaptive control to binding affinity, notably ABO versus O bg preference. H. pylori strains can switch bg preference with single DL1 amino acid substitutions, and can coexpress functionally divergent BabA isoforms. The anchor point for receptor binding is the embrace of an ABO fucose residue by a disulfide-clasped loop, which is inactivated by reduction. Treatment with the redox-active pharmaceutic N-acetylcysteine lowers gastric mucosal neutrophil infiltration in H. pylori-infected Le(b)-expressing mice, providing perspectives on possible H. pylori eradication therapies.

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