5F6J image
Deposition Date 2015-12-06
Release Date 2016-01-13
Last Version Date 2024-11-20
Entry Detail
PDB ID:
5F6J
Title:
Crystal Structure of Tier 2 Neutralizing Antibody DH427 from a Rhesus Macaque in Complex with HIV-1 gp120 Core
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
6.63 Å
R-Value Free:
0.30
R-Value Work:
0.25
R-Value Observed:
0.25
Space Group:
P 64
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:DH427 Antibody Light Chain
Chain IDs:C (auth: A), E (auth: F)
Chain Length:216
Number of Molecules:2
Biological Source:Macaca mulatta
Polymer Type:polypeptide(L)
Molecule:DH427 Antibody Heavy Chain
Chain IDs:D (auth: B), F (auth: H)
Chain Length:228
Number of Molecules:2
Biological Source:Macaca mulatta
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ENVELOPE GLYCOPROTEIN GP120 of HIV-1 clade C
Mutagens:G321K, N326S, D327N, 322-324 deletion
Chain IDs:A (auth: G), B (auth: E)
Chain Length:352
Number of Molecules:2
Biological Source:Human immunodeficiency virus 1
Ligand Molecules
Primary Citation
Structural Constraints of Vaccine-Induced Tier-2 Autologous HIV Neutralizing Antibodies Targeting the Receptor-Binding Site.
Cell Rep 14 43 54 (2016)
PMID: 26725118 DOI: 10.1016/j.celrep.2015.12.017

Abstact

Antibodies that neutralize autologous transmitted/founder (TF) HIV occur in most HIV-infected individuals and can evolve to neutralization breadth. Autologous neutralizing antibodies (nAbs) against neutralization-resistant (Tier-2) viruses are rarely induced by vaccination. Whereas broadly neutralizing antibody (bnAb)-HIV-Envelope structures have been defined, the structures of autologous nAbs have not. Here, we show that immunization with TF mutant Envs gp140 oligomers induced high-titer, V5-dependent plasma neutralization for a Tier-2 autologous TF evolved mutant virus. Structural analysis of autologous nAb DH427 revealed binding to V5, demonstrating the source of narrow nAb specificity and explaining the failure to acquire breadth. Thus, oligomeric TF Envs can elicit autologous nAbs to Tier-2 HIVs, but induction of bnAbs will require targeting of precursors of B cell lineages that can mature to heterologous neutralization.

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Primary Citation of related structures