ISDA

Deposition Date 2015-12-03

Release Date 2016-03-30

Last Version Date 2024-11-13

Entry Detail

PDB ID:

5F4P

Keywords:

VIRAL PROTEIN

Title:

HIV-1 gp120 complex with BNM-III-170

Biological Source:

Source Organism:

Human immunodeficiency virus 1 (Taxon ID: 11676)

Host Organism:

Homo sapiens

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.60 Å

R-Value Free:

0.31

R-Value Work:

0.27

R-Value Observed:

0.27

Space Group:

C 2 2 21

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:ENVELOPE GLYCOPROTEIN GP120 of HIV-1 clade C
Chain IDs:A (auth: D), B (auth: A)
Chain Length:350
Number of Molecules:2
Biological Source:Human immunodeficiency virus 1

UniProt ID:C6G099 Pfam ID:PF00516

Ligand Molecules

5VG

NAG

Primary Citation

Small-Molecule CD4-Mimics: Structure-Based Optimization of HIV-1 Entry Inhibition.

Melillo, B, Liang, S, Park, J, Schon, A, Courter, J.R, LaLonde, J.M, Wendler, D.J, Princiotto, A.M, Seaman, M.S, Freire, E, Sodroski, J, Madani, N, Hendrickson, W.A, Smith, A.B.Show

Acs Med.Chem.Lett. 7 330 334 (2016)

PMID: 26985324 DOI: 10.1021/acsmedchemlett.5b00471

Abstact

The optimization, based on computational, thermodynamic, and crystallographic data, of a series of small-molecule ligands of the Phe43 cavity of the envelope glycoprotein gp120 of human immunodeficiency virus (HIV) has been achieved. Importantly, biological evaluation revealed that the small-molecule CD4 mimics (4-7) inhibit HIV-1 entry into target cells with both significantly higher potency and neutralization breadth than previous congeners, while maintaining high selectivity for the target virus. Their binding mode was characterized via thermodynamic and crystallographic studies.

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Primary Citation of related structures