5F4O image
Deposition Date 2015-12-03
Release Date 2016-01-13
Last Version Date 2024-01-10
Entry Detail
PDB ID:
5F4O
Keywords:
VIRAL PROTEIN
Title:
Protruding domain of GII.17 norovirus Kawasaki308
Biological Source:
Source Organism:
Norovirus Hu/GII/JP/2015/GII.P17_GII.17/Kawasaki308 (Taxon ID: 1634342)
Host Organism:
Escherichia coli BL21(DE3)
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
1.59 Å
R-Value Free:
0.17
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 21 21 21
5F4O validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Capsid protein VP1
Gene (Uniprot):VP1
Chain IDs:A, B
Chain Length:307
Number of Molecules:2
Biological Source:Norovirus Hu/GII/JP/2015/GII.P17_GII.17/Kawasaki308
UniProt ID:A0A0E4B1P1 Pfam ID:PF08435
Ligand Molecules
EDO
MG
Primary Citation
Structural Evolution of the Emerging 2014-2015 GII.17 Noroviruses.
J.Virol. 90 2710 2715 (2015)
PMID: 26699640 DOI: 10.1128/JVI.03119-15

Abstact

Recent reports suggest that human genogroup II genotype 17 (GII.17) noroviruses are increasing in prevalence. We analyzed the evolutionary changes of three GII.17 capsid protruding (P) domains. We found that the GII.17 P domains had little cross-reactivity with antisera raised against the dominant GII.4 strains. X-ray structural analysis of GII.17 P domains from 2002 to 2014 and 2015 suggested that surface-exposed substitutions on the uppermost part of the P domain might have generated a novel 2014-2015 GII.17 variant.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
5F4M
5F4J