ISDA: 5F4J

Deposition Date 2015-12-03

Release Date 2016-01-13

Last Version Date 2024-01-10

Entry Detail

PDB ID:

5F4J

Keywords:

VIRAL PROTEIN

Title:

Protruding domain of GII.17 norovirus Saitama/T87

Biological Source:

Source Organism:

Norovirus GII/Hu/JP/2002/GII.P16_GII.17/Saitama/T87 (Taxon ID: 1529916)

Host Organism:

Escherichia coli BL21(DE3)

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.93 Å

R-Value Free:

0.19

R-Value Work:

0.16

R-Value Observed:

0.16

Space Group:

C 2 2 21

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Protruding domain of GII.17 norovirus capsid
Gene (Uniprot):VP1
Chain IDs:A
Chain Length:306
Number of Molecules:1
Biological Source:Norovirus GII/Hu/JP/2002/GII.P16_GII.17/Saitama/T87

UniProt ID:A0A076JB57 Pfam ID:PF08435

Ligand Molecules

EDO

Primary Citation

Structural Evolution of the Emerging 2014-2015 GII.17 Noroviruses.

Singh, B.K, Koromyslova, A, Hefele, L, Gurth, C, Hansman, G.S.Show

J.Virol. 90 2710 2715 (2015)

PMID: 26699640 DOI: 10.1128/JVI.03119-15

Abstact

Recent reports suggest that human genogroup II genotype 17 (GII.17) noroviruses are increasing in prevalence. We analyzed the evolutionary changes of three GII.17 capsid protruding (P) domains. We found that the GII.17 P domains had little cross-reactivity with antisera raised against the dominant GII.4 strains. X-ray structural analysis of GII.17 P domains from 2002 to 2014 and 2015 suggested that surface-exposed substitutions on the uppermost part of the P domain might have generated a novel 2014-2015 GII.17 variant.

Legend

Protein

Chemical

Disease

Primary Citation of related structures

Abstact

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