5F1I image
Deposition Date 2015-11-30
Release Date 2016-11-30
Last Version Date 2024-11-13
Entry Detail
PDB ID:
5F1I
Keywords:
Title:
MHC with 9-mer peptide
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.90 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
P 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:MHC class I DLA-88
Gene (Uniprot):DLA-88
Chain IDs:A, D, G, J, M, P, S, V
Chain Length:275
Number of Molecules:8
Biological Source:Canis lupus familiaris
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Beta2M
Chain IDs:B, E, H, K, N, Q, T, W
Chain Length:99
Number of Molecules:8
Biological Source:Canis lupus familiaris
Polymer Type:polypeptide(L)
Molecule:9-mer peptide
Chain IDs:C, F, I, L, O, R, U, X
Chain Length:9
Number of Molecules:8
Biological Source:Canis lupus familiaris
Ligand Molecules
Primary Citation
Diversified Anchoring Features the Peptide Presentation of DLA-88*50801: First Structural Insight into Domestic Dog MHC Class I
J Immunol. 197 2306 2315 (2016)
PMID: 27511732 DOI: 10.4049/jimmunol.1600887

Abstact

Canines represent a crucial animal model for studying human diseases and organ transplantation, as well as the evolution of domestic animals. MHCs, with a central role in cellular immunity, are commonly used in the study of dog population genetics and genome evolution. However, the molecular basis for the peptide presentation of dog MHC remains largely unknown. In this study, peptide presentation by canine MHC class I DLA-88*50801 was structurally determined, revealing diversified anchoring modes of the binding peptides. Flexible and large pockets composed of both hydrophobic and hydrophilic residues can accommodate pathogen-derived peptides with diverse anchor residues, as confirmed by thermostability measurements. Furthermore, DLA-88*50801 contains an unusual α2 helix with a large coil in the TCR contact region. These results further our understanding of canine T cell immunity through peptide presentation of MHC class I and shed light on the molecular basis for vaccine development for canine infectious diseases, for example, canine distemper virus.

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Primary Citation of related structures