5F1B image
Deposition Date 2015-11-30
Release Date 2016-01-20
Last Version Date 2024-10-09
Entry Detail
PDB ID:
5F1B
Title:
Structural basis of Ebola virus entry: viral glycoprotein bound to its endosomal receptor Niemann-Pick C1
Biological Source:
Source Organism:
Zaire ebolavirus (Taxon ID: 128951)
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.23
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 63
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:GP1
Gene (Uniprot):GP
Chain IDs:A
Chain Length:158
Number of Molecules:1
Biological Source:Zaire ebolavirus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:GP2
Gene (Uniprot):GP
Chain IDs:B
Chain Length:130
Number of Molecules:1
Biological Source:Zaire ebolavirus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Niemann-Pick C1 protein
Gene (Uniprot):NPC1
Chain IDs:C
Chain Length:256
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Ebola Viral Glycoprotein Bound to Its Endosomal Receptor Niemann-Pick C1.
Cell 164 258 268 (2016)
PMID: 26771495 DOI: 10.1016/j.cell.2015.12.044

Abstact

Filoviruses, including Ebola and Marburg, cause fatal hemorrhagic fever in humans and primates. Understanding how these viruses enter host cells could help to develop effective therapeutics. An endosomal protein, Niemann-Pick C1 (NPC1), has been identified as a necessary entry receptor for this process, and priming of the viral glycoprotein (GP) to a fusion-competent state is a prerequisite for NPC1 binding. Here, we have determined the crystal structure of the primed GP (GPcl) of Ebola virus bound to domain C of NPC1 (NPC1-C) at a resolution of 2.3 Å. NPC1-C utilizes two protruding loops to engage a hydrophobic cavity on head of GPcl. Upon enzymatic cleavage and NPC1-C binding, conformational change in the GPcl further affects the state of the internal fusion loop, triggering membrane fusion. Our data therefore provide structural insights into filovirus entry in the late endosome and the molecular basis for design of therapeutic inhibitors of viral entry.

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