5EZM image
Entry Detail
PDB ID:
5EZM
Keywords:
Title:
Crystal Structure of ArnT from Cupriavidus metallidurans in the apo state
Biological Source:
PDB Version:
Deposition Date:
2015-11-26
Release Date:
2016-02-17
Method Details:
Experimental Method:
Resolution:
2.70 Å
R-Value Free:
0.25
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:4-amino-4-deoxy-L-arabinose transferase or related glycosyltransferases of PMT family
Chain IDs:A
Chain Length:578
Number of Molecules:1
Biological Source:Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 / CH34)
Primary Citation
Structures of aminoarabinose transferase ArnT suggest a molecular basis for lipid A glycosylation.
Science 351 608 612 (2016)
PMID: 26912703 DOI: 10.1126/science.aad1172

Abstact

Polymyxins are antibiotics used in the last line of defense to combat multidrug-resistant infections by Gram-negative bacteria. Polymyxin resistance arises through charge modification of the bacterial outer membrane with the attachment of the cationic sugar 4-amino-4-deoxy-l-arabinose to lipid A, a reaction catalyzed by the integral membrane lipid-to-lipid glycosyltransferase 4-amino-4-deoxy-L-arabinose transferase (ArnT). Here, we report crystal structures of ArnT from Cupriavidus metallidurans, alone and in complex with the lipid carrier undecaprenyl phosphate, at 2.8 and 3.2 angstrom resolution, respectively. The structures show cavities for both lipidic substrates, which converge at the active site. A structural rearrangement occurs on undecaprenyl phosphate binding, which stabilizes the active site and likely allows lipid A binding. Functional mutagenesis experiments based on these structures suggest a mechanistic model for ArnT family enzymes.

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