5EXZ image
Deposition Date 2015-11-24
Release Date 2016-05-25
Last Version Date 2024-10-09
Entry Detail
PDB ID:
5EXZ
Keywords:
Title:
Crystal structure of purified recombinant CPV1 Polyhedra
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.90 Å
R-Value Free:
0.20
R-Value Work:
0.14
R-Value Observed:
0.15
Space Group:
I 2 3
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Polyhedrin
Chain IDs:A
Chain Length:248
Number of Molecules:1
Biological Source:Bombyx mori cypovirus 1
Primary Citation
A pipeline for structure determination of in vivo-grown crystals using in cellulo diffraction.
Acta Crystallogr D Struct Biol 72 576 585 (2016)
PMID: 27050136 DOI: 10.1107/S2059798316002369

Abstact

While structure determination from micrometre-sized crystals used to represent a challenge, serial X-ray crystallography on microfocus beamlines at synchrotron and free-electron laser facilities greatly facilitates this process today for microcrystals and nanocrystals. In addition to typical microcrystals of purified recombinant protein, these advances have enabled the analysis of microcrystals produced inside living cells. Here, a pipeline where crystals are grown in insect cells, sorted by flow cytometry and directly analysed by X-ray diffraction is presented and applied to in vivo-grown crystals of the recombinant CPV1 polyhedrin. When compared with the analysis of purified crystals, in cellulo diffraction produces data of better quality and a gain of ∼0.35 Å in resolution for comparable beamtime usage. Importantly, crystals within cells are readily derivatized with gold and iodine compounds through the cellular membrane. Using the multiple isomorphous replacement method, a near-complete model was autobuilt from 2.7 Å resolution data. Thus, in favourable cases, an in cellulo pipeline can replace the complete workflow of structure determination without compromising the quality of the resulting model. In addition to its efficiency, this approach maintains the protein in a cellular context throughout the analysis, which reduces the risk of disrupting transient or labile interactions in protein-protein or protein-ligand complexes.

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