5EVO image
Entry Detail
PDB ID:
5EVO
Keywords:
Title:
Structure of Dehydroascrobate Reductase from Pennisetum Americanum in complex with two non-native ligands, Acetate in the G-site and Glycerol in the H-site
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2015-11-20
Release Date:
2016-05-04
Method Details:
Experimental Method:
Resolution:
2.51 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 43 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Dehydroascorbate reductase
Chain IDs:A
Chain Length:216
Number of Molecules:1
Biological Source:Cenchrus americanus
Primary Citation
Non-native ligands define the active site of Pennisetum glaucum (L.) R. Br dehydroascorbate reductase.
Biochem.Biophys.Res.Commun. 473 1152 1157 (2016)
PMID: 27067046 DOI: 10.1016/j.bbrc.2016.04.031

Abstact

Dehydroascorbate reductase (DHAR), a member of the glutathione-S-transferase (GST) family, reduces dehydroascorbate (DHA) to ascorbate (AsA; Vitamin-C) in a glutathione (GSH)-dependent manner and in doing so, replenishes the critical AsA pool of the cell. To understand the enzyme mechanism in detail, we determined the crystal structure of a plant DHAR from Pennisetum glaucum (PgDHAR) using Iodide-Single Anomalous Dispersion (SAD) and Molecular replacement methods, in two different space groups. Here, we show PgDHAR in complex with two non-native ligands, viz. an acetate bound at the G-site, which resembles the γ-carboxyl moiety of GSH, and a glycerol at the H-site, which shares the backbone of AsA. We also show that, in the absence of bound native substrates, these non-native ligands help define the critical 'hook points' in the DHAR enzyme active site. Further, our data suggest that these non-native ligands can act as the logical bootstrapping points for iterative design of inhibitors/analogs for DHARs.

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