5ES3 image
Deposition Date 2015-11-16
Release Date 2016-01-13
Last Version Date 2023-09-27
Entry Detail
PDB ID:
5ES3
Keywords:
Title:
Co-crystal structure of LDH liganded with oxamate
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.29 Å
R-Value Free:
0.20
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:L-lactate dehydrogenase A chain
Gene (Uniprot):Ldha
Chain IDs:A, B (auth: C), C (auth: E), D (auth: F), E (auth: D), F (auth: H), G (auth: B), H (auth: G)
Chain Length:331
Number of Molecules:8
Biological Source:Rattus norvegicus
Ligand Molecules
Primary Citation
A Streamlined, Automated Protocol for the Production of Milligram Quantities of Untagged Recombinant Rat Lactate Dehydrogenase A Using AKTAxpressTM.
Plos One 10 e0146164 e0146164 (2015)
PMID: 26717415 DOI: 10.1371/journal.pone.0146164

Abstact

We developed an efficient, automated 2-step purification protocol for the production of milligram quantities of untagged recombinant rat lactate dehydrogenase A (rLDHA) from E. coli, using the ÄKTAxpress™ chromatography system. Cation exchange followed by size exclusion results in average final purity in excess of 93% and yields ~ 14 milligrams per 50 ml of original cell culture in EnPresso B media, in under 8 hrs, including all primary sample processing and column equilibration steps. The protein is highly active and coherent biophysically and a viable alternative to the more problematic human homolog for structural and ligand-binding studies; an apo structure of untagged rLDHA was solved to a resolution 2.29 Å (PDB ID 5ES3). Our automated methodology uses generic commercially available pre-packed columns and simple buffers, and represents a robust standard method for the production of milligram amounts of untagged rLDHA, facilitating a novel fragment screening approach for new inhibitors.

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Primary Citation of related structures