5EOS image
Deposition Date 2015-11-10
Release Date 2017-08-09
Last Version Date 2024-03-06
Entry Detail
PDB ID:
5EOS
Keywords:
Title:
Crystallizing Strained DNA: Self-Assembly of 3D Crystals Containing a Torsionally-Stressed Component
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
4.70 Å
R-Value Free:
0.21
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
H 3
Macromolecular Entities
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*GP*AP*GP*CP*AP*GP*CP*TP*GP*TP*G)-3')
Chain IDs:A
Chain Length:11
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*TP*CP*TP*GP*AP*TP*GP*TP*GP*CP*TP*GP*C)-3')
Chain IDs:C (auth: B)
Chain Length:13
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*AP*CP*GP*GP*AP*CP*AP*TP*CP*A)-3')
Chain IDs:D (auth: C)
Chain Length:10
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*CP*AP*CP*AP*CP*CP*GP*T)-3')
Chain IDs:B (auth: D)
Chain Length:8
Number of Molecules:1
Biological Source:synthetic construct
Ligand Molecules
Primary Citation
Self-Assembly of 3D DNA Crystals Containing a Torsionally Stressed Component.
Cell Chem Biol ? ? ? (2017)
PMID: 28988948 DOI: 10.1016/j.chembiol.2017.08.018

Abstact

There is an increasing appreciation for structural diversity of DNA that is of interest to both DNA nanotechnology and basic biology. Here, we have explored how DNA responds to torsional stress by building on a previously reported two-turn DNA tensegrity triangle and demonstrating that we could introduce an extra nucleotide pair (np) into the original sequence without affecting assembly and crystallization. The extra np imposes a significant torsional stress, which is accommodated by global changes throughout the B-DNA duplex and the DNA lattice. The work reveals a near-atomic structure of naked DNA under a torsional stress of approximately 14%, and thus provides an example of DNA distortions that occur without a requirement for either an external energy source or the free energy available from protein or drug binding.

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Primary Citation of related structures