5EOG image
Entry Detail
PDB ID:
5EOG
Keywords:
Title:
Structure of full-length human MAB21L1
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2015-11-10
Release Date:
2016-06-01
Method Details:
Experimental Method:
Resolution:
3.05 Å
R-Value Free:
0.27
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Protein mab-21-like 1
Chain IDs:A, B, C (auth: D), D (auth: F), E (auth: C)
Chain Length:362
Number of Molecules:5
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structural and biochemical characterization of the cell fate determining nucleotidyltransferase fold protein MAB21L1.
Sci Rep 6 27498 27498 (2016)
PMID: 27271801 DOI: 10.1038/srep27498

Abstact

The exceptionally conserved metazoan MAB21 proteins are implicated in cell fate decisions and share considerable sequence homology with the cyclic GMP-AMP synthase. cGAS is the major innate immune sensor for cytosolic DNA and produces the second messenger 2'-5', 3'-5' cyclic GMP-AMP. Little is known about the structure and biochemical function of other proteins of the cGAS-MAB21 subfamily, such as MAB21L1, MAB21L2 and MAB21L3. We have determined the crystal structure of human full-length MAB21L1. Our analysis reveals high structural conservation between MAB21L1 and cGAS but also uncovers important differences. Although monomeric in solution, MAB21L1 forms a highly symmetric double-pentameric oligomer in the crystal, raising the possibility that oligomerization could be a feature of MAB21L1. In the crystal, MAB21L1 is in an inactive conformation requiring a conformational change - similar to cGAS - to develop any nucleotidyltransferase activity. Co-crystallization with NTP identified a putative ligand binding site of MAB21 proteins that corresponds to the DNA binding site of cGAS. Finally, we offer a structure-based explanation for the effects of MAB21L2 mutations in patients with eye malformations. The underlying residues participate in fold-stabilizing interaction networks and mutations destabilize the protein. In summary, we provide a first structural framework for MAB21 proteins.

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Primary Citation of related structures