5EKE image
Entry Detail
PDB ID:
5EKE
Keywords:
Title:
Structure of the polyisoprenyl-phosphate glycosyltransferase GtrB (F215A mutant)
Biological Source:
PDB Version:
Deposition Date:
2015-11-03
Release Date:
2016-01-06
Method Details:
Experimental Method:
Resolution:
3.00 Å
R-Value Free:
0.27
R-Value Work:
0.24
R-Value Observed:
0.25
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Uncharacterized glycosyltransferase sll0501
Mutations:F215A
Chain IDs:A, B, C, D
Chain Length:341
Number of Molecules:4
Biological Source:Synechocystis sp. (strain PCC 6803 / Kazusa)
Primary Citation
Structure of the polyisoprenyl-phosphate glycosyltransferase GtrB and insights into the mechanism of catalysis.
Nat Commun 7 10175 10175 (2016)
PMID: 26729507 DOI: 10.1038/ncomms10175

Abstact

The attachment of a sugar to a hydrophobic polyisoprenyl carrier is the first step for all extracellular glycosylation processes. The enzymes that perform these reactions, polyisoprenyl-glycosyltransferases (PI-GTs) include dolichol phosphate mannose synthase (DPMS), which generates the mannose donor for glycosylation in the endoplasmic reticulum. Here we report the 3.0 Å resolution crystal structure of GtrB, a glucose-specific PI-GT from Synechocystis, showing a tetramer in which each protomer contributes two helices to a membrane-spanning bundle. The active site is 15 Å from the membrane, raising the question of how water-soluble and membrane-embedded substrates are brought into apposition for catalysis. A conserved juxtamembrane domain harbours disease mutations, which compromised activity in GtrB in vitro and in human DPM1 tested in zebrafish. We hypothesize a role of this domain in shielding the polyisoprenyl-phosphate for transport to the active site. Our results reveal the basis of PI-GT function, and provide a potential molecular explanation for DPM1-related disease.

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Primary Citation of related structures