5EKD image
Deposition Date 2015-11-03
Release Date 2016-11-16
Last Version Date 2023-09-27
Entry Detail
PDB ID:
5EKD
Keywords:
LIGASE/ANTIBIOTIC
Title:
Human mitochondrial tryptophanyl-tRNA synthetase bound by indolmycin and Mn*ATP.
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Escherichia coli
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
1.82 Å
R-Value Free:
0.20
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
C 1 2 1
5EKD validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Tryptophan--tRNA ligase, mitochondrial
Gene (Uniprot):WARS2
Chain IDs:A, B
Chain Length:343
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:Q9UGM6 Pfam ID:PF00579 EC:6.1.1.2
Ligand Molecules
5BX
ATP
GOL
MN
Primary Citation
Binding of Mg2+ATP Enhances Inhibition of Human Mitochondrial Tryptophanyl-tRNA Synthetase by Indolmycin
To Be Published ? ? ? (?)
Primary Citation of related structures
5EKD