5EIX image
Deposition Date 2015-10-30
Release Date 2016-04-13
Last Version Date 2024-05-08
Entry Detail
PDB ID:
5EIX
Keywords:
Title:
QUINOLONE-STABILIZED CLEAVAGE COMPLEX OF TOPOISOMERASE IV FROM KLEBSIELLA PNEUMONIAE
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.35 Å
R-Value Free:
0.25
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:DNA topoisomerase 4 subunit B,DNA topoisomerase 4 subunit A
Chain IDs:A, D (auth: B), G, J
Chain Length:741
Number of Molecules:4
Biological Source:Klebsiella pneumoniae
Polymer Type:polydeoxyribonucleotide
Molecule:SYMMETRISED E-SITE (PRE-CUT)
Chain IDs:B (auth: E), E (auth: C), H, K
Chain Length:8
Number of Molecules:4
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:SYMMETRISED E-SITE (PRE-CUT)
Chain IDs:C (auth: F), F (auth: D), I, L
Chain Length:12
Number of Molecules:4
Biological Source:synthetic construct
Primary Citation
Structure of a quinolone-stabilized cleavage complex of topoisomerase IV from Klebsiella pneumoniae and comparison with a related Streptococcus pneumoniae complex.
Acta Crystallogr D Struct Biol 72 488 496 (2016)
PMID: 27050128 DOI: 10.1107/S2059798316001212

Abstact

Klebsiella pneumoniae is a Gram-negative bacterium that is responsible for a range of common infections, including pulmonary pneumonia, bloodstream infections and meningitis. Certain strains of Klebsiella have become highly resistant to antibiotics. Despite the vast amount of research carried out on this class of bacteria, the molecular structure of its topoisomerase IV, a type II topoisomerase essential for catalysing chromosomal segregation, had remained unknown. In this paper, the structure of its DNA-cleavage complex is reported at 3.35 Å resolution. The complex is comprised of ParC breakage-reunion and ParE TOPRIM domains of K. pneumoniae topoisomerase IV with DNA stabilized by levofloxacin, a broad-spectrum fluoroquinolone antimicrobial agent. This complex is compared with a similar complex from Streptococcus pneumoniae, which has recently been solved.

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Primary Citation of related structures