5EHK image
Entry Detail
PDB ID:
5EHK
Keywords:
Title:
Crystal structure of tRNA dependent lantibiotic dehydratase MibB from Microbispora sp. 107891
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2015-10-28
Release Date:
2016-03-02
Method Details:
Experimental Method:
Resolution:
2.71 Å
R-Value Free:
0.26
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Lantibiotic dehydratase
Chain IDs:A, B
Chain Length:1115
Number of Molecules:2
Biological Source:Microbispora corallina
Primary Citation
Structure and tRNA Specificity of MibB, a Lantibiotic Dehydratase from Actinobacteria Involved in NAI-107 Biosynthesis.
Cell Chem Biol 23 370 380 (2016)
PMID: 26877024 DOI: 10.1016/j.chembiol.2015.11.017

Abstact

Class I lantibiotic dehydratases dehydrate selected Ser/Thr residues of a precursor peptide. Recent studies demonstrated the requirement of glutamyl-tRNA(Glu) for Ser/Thr activation by one of these enzymes (NisB) from the Firmicute Lactococcus lactis. However, the generality of glutamyl-tRNA(Glu) usage and the tRNA specificity of lantibiotic dehydratases have not been established. Here we report the 2.7-Å resolution crystal structure, along with the glutamyl-tRNA(Glu) utilization of MibB, a lantibiotic dehydratase from the Actinobacterium Microbispora sp. 107891 involved in the biosynthesis of the clinical candidate NAI-107. Biochemical assays revealed nucleotides A73 and U72 within the tRNA(Glu) acceptor stem to be important for MibB glutamyl-tRNA(Glu) usage. Using this knowledge, an expression system for the production of NAI-107 analogs in Escherichia coli was developed, overcoming the inability of MibB to utilize E. coli tRNA(Glu). Our work provides evidence for a common tRNA(Glu)-dependent dehydration mechanism, paving the way for the characterization of lantibiotics from various phyla.

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