5EGA image
Deposition Date 2015-10-26
Release Date 2016-08-31
Last Version Date 2023-09-27
Entry Detail
PDB ID:
5EGA
Title:
2009 H1N1 PA endonuclease domain in complex with an N-acylhydrazone inhibitor
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.15 Å
R-Value Free:
0.23
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 64 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Polymerase acidic protein
Gene (Uniprot):PA
Chain IDs:A
Chain Length:187
Number of Molecules:1
Biological Source:Influenza A virus
Primary Citation
N-acylhydrazone inhibitors of influenza virus PA endonuclease with versatile metal binding modes.
Sci Rep 6 31500 31500 (2016)
PMID: 27510745 DOI: 10.1038/srep31500

Abstact

Influenza virus PA endonuclease has recently emerged as an attractive target for the development of novel antiviral therapeutics. This is an enzyme with divalent metal ion(s) (Mg(2+) or Mn(2+)) in its catalytic site: chelation of these metal cofactors is an attractive strategy to inhibit enzymatic activity. Here we report the activity of a series of N-acylhydrazones in an enzymatic assay with PA-Nter endonuclease, as well as in cell-based influenza vRNP reconstitution and virus yield assays. Several N-acylhydrazones were found to have promising anti-influenza activity in the low micromolar concentration range and good selectivity. Computational docking studies are carried on to investigate the key features that determine inhibition of the endonuclease enzyme by N-acylhydrazones. Moreover, we here describe the crystal structure of PA-Nter in complex with one of the most active inhibitors, revealing its interactions within the protein's active site.

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