5EEG image
Entry Detail
PDB ID:
5EEG
Keywords:
Title:
Crystal structure of carminomycin-4-O-methyltransferase DnrK in complex with tetrazole-SAH
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2015-10-22
Release Date:
2015-12-23
Method Details:
Experimental Method:
Resolution:
2.26 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Carminomycin 4-O-methyltransferase DnrK
Chain IDs:A, B
Chain Length:376
Number of Molecules:2
Biological Source:Streptomyces peucetius
Ligand Molecules
Primary Citation
Functional AdoMet Isosteres Resistant to Classical AdoMet Degradation Pathways.
Acs Chem.Biol. 11 2484 2491 (2016)
PMID: 27351335 DOI: 10.1021/acschembio.6b00348

Abstact

S-adenosyl-l-methionine (AdoMet) is an essential enzyme cosubstrate in fundamental biology with an expanding range of biocatalytic and therapeutic applications. We report the design, synthesis, and evaluation of stable, functional AdoMet isosteres that are resistant to the primary contributors to AdoMet degradation (depurination, intramolecular cyclization, and sulfonium epimerization). Corresponding biochemical and structural studies demonstrate the AdoMet surrogates to serve as competent enzyme cosubstrates and to bind a prototypical class I model methyltransferase (DnrK) in a manner nearly identical to AdoMet. Given this conservation in function and molecular recognition, the isosteres presented are anticipated to serve as useful surrogates in other AdoMet-dependent processes and may also be resistant to, and/or potentially even inhibit, other therapeutically relevant AdoMet-dependent metabolic transformations (such as the validated drug target AdoMet decarboxylase). This work also highlights the ability of the prototypical class I model methyltransferase DnrK to accept non-native surrogate acceptors as an enabling feature of a new high-throughput methyltransferase assay.

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