5EE4 image
Deposition Date 2015-10-22
Release Date 2015-11-04
Last Version Date 2024-01-10
Entry Detail
PDB ID:
5EE4
Keywords:
Title:
The crystal structure of HpuA from Kingella denitrificans in complex with human haemoglobin
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:HpuA
Gene (Uniprot):HMPREF9098_0447
Chain IDs:A, B
Chain Length:322
Number of Molecules:2
Biological Source:Kingella denitrificans ATCC 33394
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hemoglobin subunit alpha
Gene (Uniprot):HBA1, HBA2
Chain IDs:C, E
Chain Length:141
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hemoglobin subunit beta
Gene (Uniprot):HBB
Chain IDs:D, F
Chain Length:146
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Structural analysis of haemoglobin binding by HpuA from the Neisseriaceae family.
Nat Commun 6 10172 10172 (2015)
PMID: 26671256 DOI: 10.1038/ncomms10172

Abstact

The Neisseriaceae family of bacteria causes a range of diseases including meningitis, septicaemia, gonorrhoea and endocarditis, and extracts haem from haemoglobin as an important iron source within the iron-limited environment of its human host. Herein we report crystal structures of apo- and haemoglobin-bound HpuA, an essential component of this haem import system. The interface involves long loops on the bacterial receptor that present hydrophobic side chains for packing against the surface of haemoglobin. Interestingly, our structural and biochemical analyses of Kingella denitrificans and Neisseria gonorrhoeae HpuA mutants, although validating the interactions observed in the crystal structure, show how Neisseriaceae have the fascinating ability to diversify functional sequences and yet retain the haemoglobin binding function. Our results present the first description of HpuA's role in direct binding of haemoglobin.

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Primary Citation of related structures