5EDW image
Deposition Date 2015-10-22
Release Date 2016-11-02
Last Version Date 2023-09-27
Entry Detail
PDB ID:
5EDW
Keywords:
transferase/dna
Title:
Ternary structure of Dpo4 bound to G in the template base paired with incoming dTTP
Biological Source:
Source Organism:
Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (Taxon ID: 273057)
Host Organism:
Escherichia coli
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
2.62 Å
R-Value Free:
0.28
R-Value Work:
0.21
R-Value Observed:
0.22
Space Group:
P 21 21 2
5EDW validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA polymerase IV
Gene (Uniprot):dbh
Chain IDs:A
Chain Length:341
Number of Molecules:1
Biological Source:Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
UniProt ID:Q97W02 Pfam ID:PF00817, PF11798, PF11799 EC:2.7.7.7
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*C)-3')
Chain IDs:C (auth: P)
Chain Length:13
Number of Molecules:1
Biological Source:Sulfolobus solfataricus P2
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*CP*TP*AP*AP*CP*GP*GP*GP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3')
Chain IDs:B (auth: T)
Chain Length:19
Number of Molecules:1
Biological Source:Sulfolobus solfataricus P2
Ligand Molecules
CA
TTP
Primary Citation
Structure of Dpo4 DNA polymerase replicating across the genotoxic N7-methylguanine lesion
To Be Published ? ? ? (?)
Primary Citation of related structures
5EDW