5EDF image
Deposition Date 2015-10-21
Release Date 2017-02-01
Last Version Date 2024-11-20
Entry Detail
PDB ID:
5EDF
Title:
Crystal structure of the selenomethionine-substituted iron-regulated protein FrpD from Neisseria meningitidis
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.40 Å
R-Value Free:
0.19
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:FrpC operon protein
Mutagens:54:MSE; 70:MSE; 156:MSE; 168:MSE
Chain IDs:A
Chain Length:244
Number of Molecules:1
Biological Source:Neisseria meningitidis
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET modified residue
Primary Citation
Structural basis of the interaction between the putative adhesion-involved and iron-regulated FrpD and FrpC proteins of Neisseria meningitidis.
Sci Rep 7 40408 40408 (2017)
PMID: 28084396 DOI: 10.1038/srep40408

Abstact

The iron-regulated protein FrpD from Neisseria meningitidis is an outer membrane lipoprotein that interacts with very high affinity (Kd ~ 0.2 nM) with the N-terminal domain of FrpC, a Type I-secreted protein from the Repeat in ToXin (RTX) protein family. In the presence of Ca2+, FrpC undergoes Ca2+ -dependent protein trans-splicing that includes an autocatalytic cleavage of the Asp414-Pro415 peptide bond and formation of an Asp414-Lys isopeptide bond. Here, we report the high-resolution structure of FrpD and describe the structure-function relationships underlying the interaction between FrpD and FrpC1-414. We identified FrpD residues involved in FrpC1-414 binding, which enabled localization of FrpD within the low-resolution SAXS model of the FrpD-FrpC1-414 complex. Moreover, the trans-splicing activity of FrpC resulted in covalent linkage of the FrpC1-414 fragment to plasma membrane proteins of epithelial cells in vitro, suggesting that formation of the FrpD-FrpC1-414 complex may be involved in the interaction of meningococci with the host cell surface.

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Primary Citation of related structures