5EC5 image
Entry Detail
PDB ID:
5EC5
Keywords:
Title:
Crystal structure of lysenin pore
Biological Source:
PDB Version:
Deposition Date:
2015-10-20
Release Date:
2016-05-18
Method Details:
Experimental Method:
Resolution:
3.10 Å
R-Value Free:
0.25
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 43 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Lysenin
Mutations:E84Q/E85K/E92Q/E97S/D126G
Chain IDs:A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q (auth: R), R (auth: S)
Chain Length:298
Number of Molecules:18
Biological Source:Eisenia fetida
Primary Citation
Crystal structure of an invertebrate cytolysin pore reveals unique properties and mechanism of assembly.
Nat Commun 7 11598 11598 (2016)
PMID: 27176125 DOI: 10.1038/ncomms11598

Abstact

The invertebrate cytolysin lysenin is a member of the aerolysin family of pore-forming toxins that includes many representatives from pathogenic bacteria. Here we report the crystal structure of the lysenin pore and provide insights into its assembly mechanism. The lysenin pore is assembled from nine monomers via dramatic reorganization of almost half of the monomeric subunit structure leading to a β-barrel pore ∼10 nm long and 1.6-2.5 nm wide. The lysenin pore is devoid of additional luminal compartments as commonly found in other toxin pores. Mutagenic analysis and atomic force microscopy imaging, together with these structural insights, suggest a mechanism for pore assembly for lysenin. These insights are relevant to the understanding of pore formation by other aerolysin-like pore-forming toxins, which often represent crucial virulence factors in bacteria.

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