5E9A image
Deposition Date 2015-10-14
Release Date 2016-10-26
Last Version Date 2024-03-06
Entry Detail
PDB ID:
5E9A
Keywords:
Title:
Crystal structure analysis of the cold-adamped beta-galactosidase from Rahnella sp. R3
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.56 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Beta-galactosidase
Chain IDs:A, B, C, D, E, F
Chain Length:712
Number of Molecules:6
Biological Source:Rahnella sp. R3
Primary Citation
Cloning, expression and structural stability of a cold-adapted beta-galactosidase from Rahnella sp. R3.
Protein Expr.Purif. 115 158 164 (2015)
PMID: 26145832 DOI: 10.1016/j.pep.2015.07.001

Abstact

A novel gene was isolated for the first time from a psychrophilic gram-negative bacterium Rahnella sp. R3. The gene encoded a cold-adapted β-galactosidase (R-β-Gal). Recombinant R-β-Gal was expressed in Escherichia coli BL21 (DE3), purified and characterized. R-β-gal belongs to the glycosyl hydrolase family 42. Circular dichroism spectrometry of the structural stability of R-β-Gal with respect to temperature indicated that the secondary structures of the enzyme were stable to 45°C. In solution, the enzyme was a homo-trimer and was active at temperatures as low as 4°C. The enzyme did not require the presence of metal ions to be active, but Mg(2+), Mn(2+), and Ca(2+) enhanced its activity slightly, whereas Fe(3+), Zn(2+) and Al(3+) appeared to inactive it. The purified enzyme displayed K(m) values of 6.5 mM for ONPG and 2.2mM for lactose at 4°C. These values were lower than the corresponding K(m)s reported for other cold-adapted β-Gals.

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