5E4W image
Deposition Date 2015-10-07
Release Date 2015-12-02
Last Version Date 2024-10-09
Entry Detail
PDB ID:
5E4W
Title:
Crystal structure of cpSRP43 chromodomains 2 and 3 in complex with the Alb3 tail
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Free:
0.29
R-Value Work:
0.24
R-Value Observed:
0.25
Space Group:
P 21 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Thioredoxin-1
Gene (Uniprot):trxA
Chain IDs:A, B
Chain Length:109
Number of Molecules:2
Biological Source:Escherichia coli O157:H7
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Signal recognition particle 43 kDa protein, chloroplastic
Gene (Uniprot):CAO
Chain IDs:C, D
Chain Length:105
Number of Molecules:2
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Inner membrane protein ALBINO3, chloroplastic
Gene (Uniprot):ALB3
Chain IDs:E, F
Chain Length:9
Number of Molecules:2
Biological Source:Arabidopsis thaliana
Primary Citation
Structural basis for cpSRP43 chromodomain selectivity and dynamics in Alb3 insertase interaction.
Nat Commun 6 8875 8875 (2015)
PMID: 26568381 DOI: 10.1038/ncomms9875

Abstact

Canonical membrane protein biogenesis requires co-translational delivery of ribosome-associated proteins to the Sec translocase and depends on the signal recognition particle (SRP) and its receptor (SR). In contrast, high-throughput delivery of abundant light-harvesting chlorophyll a,b-binding proteins (LHCPs) in chloroplasts to the Alb3 insertase occurs post-translationally via a soluble transit complex including the cpSRP43/cpSRP54 heterodimer (cpSRP). Here we describe the molecular mechanisms of tethering cpSRP to the Alb3 insertase by specific interaction of cpSRP43 chromodomain 3 with a linear motif in the Alb3 C-terminal tail. Combining NMR spectroscopy, X-ray crystallography and biochemical analyses, we dissect the structural basis for selectivity of chromodomains 2 and 3 for their respective ligands cpSRP54 and Alb3, respectively. Negative cooperativity in ligand binding can be explained by dynamics in the chromodomain interface. Our study provides a model for membrane recruitment of the transit complex and may serve as a prototype for a functional gain by the tandem arrangement of chromodomains.

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