5E1R image
Deposition Date 2015-09-30
Release Date 2016-08-10
Last Version Date 2024-03-06
Entry Detail
PDB ID:
5E1R
Keywords:
Title:
Crystal structure of pecan (carya illinoinensis) vicilin, a new food allergen
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.65 Å
R-Value Free:
0.26
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:7S vicilin
Gene (Uniprot):pec2a1a
Chain IDs:A, B, C, D, E, F
Chain Length:426
Number of Molecules:6
Biological Source:Carya illinoinensis
Primary Citation
Identification and Characterization of a New Pecan [Carya illinoinensis (Wangenh.) K. Koch] Allergen, Car i 2.
J.Agric.Food Chem. 64 4146 4151 (2016)
PMID: 27128197 DOI: 10.1021/acs.jafc.6b00884

Abstact

The 7S vicilin and 11S legumin seed storage globulins belong to the cupin protein superfamily and are major food allergens in many foods from the "big eight" food allergen groups. Here, for the first time, pecan vicilin was found to be a food allergen. Western blot experiments revealed that 30% of 27 sera used in this study and 24% of the sera from 25 patients with double-blind, placebo controlled clinical pecan allergy contained IgE antibodies specific to pecan vicilin. This allergen consists of a low-complexity region at its N-terminal and a structured domain at the C-terminal that contains two cupin motifs and forms homotrimers. The crystal structure of recombinant pecan vicilin was determined. The refined structure gave R/Rfree values of 0.218/0.262 for all data to 2.65 Å. There were two trimeric biological units in the crystallographic asymmetric unit. Pecan vicilin is also a copper protein. These data may facilitate the understanding of the nutritional value and the allergenicity relevance of the copper binding property of seed storage proteins in tree nuts.

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