5DYV image
Entry Detail
PDB ID:
5DYV
Keywords:
Title:
AbyU - wildtype
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2015-09-25
Release Date:
2016-06-08
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.25
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:YD repeat-containing protein
Chain IDs:A, B, C, D, E, F, G, H
Chain Length:160
Number of Molecules:8
Biological Source:Verrucosispora maris
Ligand Molecules
Primary Citation
The Catalytic Mechanism of a Natural Diels-Alderase Revealed in Molecular Detail.
J.Am.Chem.Soc. 138 6095 6098 (2016)
PMID: 27140661 DOI: 10.1021/jacs.6b00232

Abstact

The Diels-Alder reaction, a [4 + 2] cycloaddition of a conjugated diene to a dienophile, is one of the most powerful reactions in synthetic chemistry. Biocatalysts capable of unlocking new and efficient Diels-Alder reactions would have major impact. Here we present a molecular-level description of the reaction mechanism of the spirotetronate cyclase AbyU, an enzyme shown here to be a bona fide natural Diels-Alderase. Using enzyme assays, X-ray crystal structures, and simulations of the reaction in the enzyme, we reveal how linear substrate chains are contorted within the AbyU active site to facilitate a transannular pericyclic reaction. This study provides compelling evidence for the existence of a natural enzyme evolved to catalyze a Diels-Alder reaction and shows how catalysis is achieved.

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Primary Citation of related structures