5DYP image
Entry Detail
PDB ID:
5DYP
Keywords:
Title:
Crystal structure of Asp251Gly/Gln307His mutant of cytochrome P450 BM3
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2015-09-25
Release Date:
2016-01-20
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.25
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Bifunctional P-450/NADPH-P450 reductase
Mutations:D251G, Q307H
Chain IDs:A, B (auth: C)
Chain Length:470
Number of Molecules:2
Biological Source:Bacillus megaterium
Ligand Molecules
Primary Citation
Subtle structural changes in the Asp251Gly/Gln307His P450 BM3 mutant responsible for new activity toward diclofenac, tolbutamide and ibuprofen.
Arch.Biochem.Biophys. 602 106 115 (2016)
PMID: 26718083 DOI: 10.1016/j.abb.2015.12.005

Abstact

This paper reports the structure of the double mutant Asp251Gly/Gln307His (named A2) generated by random mutagenesis, able to produce 4'-hydroxydiclofenac, 2-hydroxyibuprofen and 4-hydroxytolbutamide from diclofenac, ibuprofen and tolbutamide, respectively. The 3D structure of the substrate-free mutant shows a conformation similar to the closed one found in the substrate-bound wild type enzyme, but with a higher degree of disorder in the region of the G-helix and F-G loop. This is due to the mutation Asp251Gly that breaks the salt bridge between Aps251 on I-helix and Lys224 on G-helix, allowing the G-helix to move away from I-helix and conferring a higher degree of flexibility to this element. This subtle structural change is accompanied by long-range structural rearrangements of the active site with the rotation of Phe87 and a reorganization of catalytically important water molecules. The impact of these structural features on thermal stability, reduction potential and electron transfer is investigated. The data demonstrate that a single mutation far from the active site triggers an increase in protein flexibility in a key region, shifting the conformational equilibrium toward the closed form that is ready to accept electrons and enter the P450 catalytic cycle as soon as a substrate is accepted.

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Primary Citation of related structures