5DWK image
Entry Detail
PDB ID:
5DWK
Keywords:
Title:
Diacylglycerol Kinase solved by multi crystal multi orientation native SAD
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2015-09-22
Release Date:
2016-03-23
Method Details:
Experimental Method:
Resolution:
2.60 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Diacylglycerol kinase
Chain IDs:A, B, C, D, E, F
Chain Length:130
Number of Molecules:6
Biological Source:Escherichia coli
Primary Citation
Data-collection strategy for challenging native SAD phasing.
Acta Crystallogr D Struct Biol 72 421 429 (2016)
PMID: 26960129 DOI: 10.1107/S2059798315024110

Abstact

Recent improvements in data-collection strategies have pushed the limits of native SAD (single-wavelength anomalous diffraction) phasing, a method that uses the weak anomalous signal of light elements naturally present in macromolecules. These involve the merging of multiple data sets from either multiple crystals or from a single crystal collected in multiple orientations at a low X-ray dose. Both approaches yield data of high multiplicity while minimizing radiation damage and systematic error, thus ensuring accurate measurements of the anomalous differences. Here, the combined use of these two strategies is described to solve cases of native SAD phasing that were particular challenges: the integral membrane diacylglycerol kinase (DgkA) with a low Bijvoet ratio of 1% and the large 200 kDa complex of the CRISPR-associated endonuclease (Cas9) bound to guide RNA and target DNA crystallized in the low-symmetry space group C2. The optimal native SAD data-collection strategy based on systematic measurements performed on the 266 kDa multiprotein/multiligand tubulin complex is discussed.

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