5DUR image
Deposition Date 2015-09-20
Release Date 2015-12-16
Last Version Date 2024-10-09
Entry Detail
PDB ID:
5DUR
Keywords:
Title:
Influenza A virus H5 hemagglutinin globular head in complex with antibody 100F4
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.82 Å
R-Value Free:
0.25
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hemagglutinin
Gene (Uniprot):HA
Chain IDs:C, F (auth: A)
Chain Length:233
Number of Molecules:2
Biological Source:Influenza A virus (A/Anhui/1/2005(H5N1))
Polymer Type:polypeptide(L)
Molecule:Heavy Chain of Antibody 100F4
Chain IDs:A (auth: H), D (auth: B)
Chain Length:231
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Light Chain of Antibody 100F4
Chain IDs:B (auth: L), E (auth: D)
Chain Length:218
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Comprehensive analysis of antibody recognition in convalescent humans from highly pathogenic avian influenza H5N1 infection
Nat Commun 6 8855 8855 (2015)
PMID: 26635249 DOI: 10.1038/ncomms9855

Abstact

Understanding the mechanism of protective antibody recognition against highly pathogenic avian influenza A virus H5N1 in humans is critical for the development of effective therapies and vaccines. Here we report the crystal structure of three H5-specific human monoclonal antibodies bound to the globular head of hemagglutinin (HA) with distinct epitope specificities, neutralization potencies and breadth. A structural and functional analysis of these epitopes combined with those reported elsewhere identifies four major vulnerable sites on the globular head of H5N1 HA. Chimeric and vulnerable site-specific mutant pseudoviruses are generated to delineate broad neutralization specificities of convalescent sera from two individuals who recovered from the infection with H5N1 virus. Our results show that the four vulnerable sites on the globular head rather than the stem region are the major neutralizing targets, suggesting that during natural H5N1 infection neutralizing antibodies against the globular head work in concert to provide protective antibody-mediated immunity.

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Primary Citation of related structures