5DOR image
Deposition Date 2015-09-11
Release Date 2015-12-02
Last Version Date 2024-01-10
Entry Detail
PDB ID:
5DOR
Keywords:
Title:
P2 Integrase catalytic domain in space group P21
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.27
R-Value Work:
0.22
R-Value Observed:
0.23
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Integrase
Gene (Uniprot):int
Chain IDs:A, B, C, D
Chain Length:176
Number of Molecules:4
Biological Source:Enterobacteria phage P2
Primary Citation
Crystal structure of the bacteriophage P2 integrase catalytic domain.
Febs Lett. 589 3556 3563 (2015)
PMID: 26453836 DOI: 10.1016/j.febslet.2015.09.026

Abstact

Bacteriophage P2 is a temperate phage capable of integrating its DNA into the host genome by site-specific recombination upon lysogenization. Integration and excision of the phage genome requires P2 integrase, which performs recognition, cleavage and joining of DNA during these processes. This work presents the high-resolution crystal structure of the catalytic domain of P2 integrase, and analysis of the structure-function relationship of several previously identified non-functional P2 integrase mutants. The DNA binding area is characterized by a large positively charged patch, harboring key residues. The structure reveals potential for large dimer flexibility, likely essential for rearrangement of DNA strands upon integration and excision of the phage DNA.

Legend

Protein

Chemical

Disease

Primary Citation of related structures