5DOC image
Deposition Date 2015-09-11
Release Date 2015-11-25
Last Version Date 2024-03-06
Entry Detail
PDB ID:
5DOC
Title:
Crystal structure of the Human Cytomegalovirus UL53 subunit of the NEC
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.94 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Virion egress protein UL31 homolog
Gene (Uniprot):NEC1
Chain IDs:A, B
Chain Length:203
Number of Molecules:2
Biological Source:Human cytomegalovirus (strain AD169)
Primary Citation
Unexpected features and mechanism of heterodimer formation of a herpesvirus nuclear egress complex.
Embo J. 34 2937 2952 (2015)
PMID: 26511021 DOI: 10.15252/embj.201592651

Abstact

Herpesvirus nucleocapsids escape from the nucleus in a process orchestrated by a highly conserved, viral nuclear egress complex. In human cytomegalovirus, the complex consists of two proteins, UL50 and UL53. We solved structures of versions of UL53 and the complex by X-ray crystallography. The UL53 structures, determined at 1.93 and 3.0 Å resolution, contained unexpected features including a Bergerat fold resembling that found in certain nucleotide-binding proteins, and a Cys3His zinc finger. Substitutions of zinc-coordinating residues decreased UL50-UL53 co-localization in transfected cells, and, when incorporated into the HCMV genome, ablated viral replication. The structure of the complex, determined at 2.47 Å resolution, revealed a mechanism of heterodimerization in which UL50 clamps onto helices of UL53 like a vise. Substitutions of particular residues on the interaction interface disrupted UL50-UL53 co-localization in transfected cells and abolished virus production. The structures and the identification of contacts can be harnessed toward the rational design of novel and highly specific antiviral drugs and will aid in the detailed understanding of nuclear egress.

Legend

Protein

Chemical

Disease

Primary Citation of related structures