5DMJ image
Deposition Date 2015-09-08
Release Date 2016-06-01
Last Version Date 2024-11-20
Entry Detail
PDB ID:
5DMJ
Title:
Structure of the extracellular domain of the CD40 in complex with 3H56-5 DAB
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.79 Å
R-Value Free:
0.25
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Tumor necrosis factor receptor superfamily member 5
Gene (Uniprot):CD40
Mutagens:D153, D180
Chain IDs:A, C (auth: D), E (auth: F)
Chain Length:183
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:3H65-5 domain antibody (dAb)
Chain IDs:B, D (auth: E), F (auth: G)
Chain Length:121
Number of Molecules:3
Biological Source:Homo sapiens
Primary Citation
Functional Antagonism of Human CD40 Achieved by Targeting a Unique Species-Specific Epitope.
J.Mol.Biol. 428 2860 2879 (2016)
PMID: 27216500 DOI: 10.1016/j.jmb.2016.05.014

Abstact

Current clinical anti-CD40 biologic agents include both antagonist molecules for the treatment of autoimmune diseases and agonist molecules for immuno-oncology, yet the relationship between CD40 epitope and these opposing biological outcomes is not well defined. This report describes the identification of potent antagonist domain antibodies (dAbs) that bind to a novel human CD40-specific epitope that is divergent in the CD40 of nonhuman primates. A similarly selected anti-cynomolgus CD40 dAb recognizing the homologous epitope is also a potent antagonist. Mutagenesis, biochemical, and X-ray crystallography studies demonstrate that the epitope is distinct from that of CD40 agonists. Both the human-specific and cynomolgus-specific molecules remain pure antagonists even when formatted as bivalent Fc-fusion proteins, making this an attractive therapeutic format for targeting hCD40 in autoimmune indications.

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Primary Citation of related structures