5DLQ image
Deposition Date 2015-09-07
Release Date 2016-06-22
Last Version Date 2024-10-16
Entry Detail
PDB ID:
5DLQ
Title:
Crystal structure of RanGTP-Exportin 4-eIF5A complex
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.20 Å
R-Value Free:
0.26
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 31 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Exportin-4
Gene (Uniprot):Xpo4
Mutations:H1085Y
Chain IDs:A (auth: B), D (auth: A)
Chain Length:1113
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:GTP-binding nuclear protein Ran
Gene (Uniprot):RAN
Mutations:Q69L
Chain IDs:B (auth: C), E (auth: D)
Chain Length:176
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Eukaryotic translation initiation factor 5A-1
Gene (Uniprot):EIF5A
Chain IDs:C (auth: F), F (auth: E)
Chain Length:141
Number of Molecules:2
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
5CT C LYS modified residue
Primary Citation
Structure of the exportin Xpo4 in complex with RanGTP and the hypusine-containing translation factor eIF5A.
Nat Commun 7 11952 11952 (2016)
PMID: 27306458 DOI: 10.1038/ncomms11952

Abstact

Xpo4 is a bidirectional nuclear transport receptor that mediates nuclear export of eIF5A and Smad3 as well as import of Sox2 and SRY. How Xpo4 recognizes such a variety of cargoes is as yet unknown. Here we present the crystal structure of the RanGTP·Xpo4·eIF5A export complex at 3.2 Å resolution. Xpo4 has a similar structure as CRM1, but the NES-binding site is occluded, and a new interaction site evolved that recognizes both globular domains of eIF5A. eIF5A contains hypusine, a unique amino acid with two positive charges, which is essential for cell viability and eIF5A function in translation. The hypusine docks into a deep, acidic pocket of Xpo4 and is thus a critical element of eIF5A's complex export signature. This further suggests that Xpo4 recognizes other cargoes differently, and illustrates how Xpo4 suppresses - in a chaperone-like manner - undesired interactions of eIF5A inside nuclei.

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Primary Citation of related structures