5DJQ image
Deposition Date 2015-09-02
Release Date 2016-01-13
Last Version Date 2024-11-20
Entry Detail
PDB ID:
5DJQ
Keywords:
Title:
The structure of CBB3 cytochrome oxidase.
Biological Source:
Method Details:
Experimental Method:
Resolution:
3.20 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cbb3-type cytochrome c oxidase subunit CcoN1
Gene (Uniprot):ccoN1
Chain IDs:A, D, G, J (auth: K)
Chain Length:474
Number of Molecules:4
Biological Source:Pseudomonas stutzeri
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cbb3-type cytochrome c oxidase subunit II
Gene (Uniprot):ccoO1
Chain IDs:B, E, H, K (auth: L)
Chain Length:203
Number of Molecules:4
Biological Source:Pseudomonas stutzeri
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cbb3-type cytochrome c oxidase subunit CcoP1
Gene (Uniprot):ccoP1
Chain IDs:C, F, I, L (auth: M)
Chain Length:311
Number of Molecules:4
Biological Source:Pseudomonas stutzeri
Polymer Type:polypeptide(L)
Molecule:Putative uncharacterized protein
Chain IDs:M (auth: N), N (auth: O), O (auth: P), P (auth: Q)
Chain Length:36
Number of Molecules:4
Biological Source:Pseudomonas stutzeri ATCC 14405 = CCUG 16156
Primary Citation
The structure of cbb3 cytochrome oxidase provides insights into proton pumping.
Science 329 327 330 (2010)
PMID: 20576851 DOI: 10.1126/science.1187303

Abstact

The heme-copper oxidases (HCOs) accomplish the key event of aerobic respiration; they couple O2 reduction and transmembrane proton pumping. To gain new insights into the still enigmatic process, we structurally characterized a C-family HCO--essential for the pathogenicity of many bacteria--that differs from the two other HCO families, A and B, that have been structurally analyzed. The x-ray structure of the C-family cbb3 oxidase from Pseudomonas stutzeri at 3.2 angstrom resolution shows an electron supply system different from families A and B. Like family-B HCOs, C HCOs have only one pathway, which conducts protons via an alternative tyrosine-histidine cross-link. Structural differences around hemes b and b3 suggest a different redox-driven proton-pumping mechanism and provide clues to explain the higher activity of family-C HCOs at low oxygen concentrations.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
Feedback Form
Name
Email
Institute
Feedback