5DJB image
Deposition Date 2015-09-01
Release Date 2015-12-16
Last Version Date 2023-09-27
Entry Detail
PDB ID:
5DJB
Title:
Structure of the Haliangium ochraceum BMC-H shell protein
Biological Source:
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.20
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 3
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Microcompartments protein
Gene (Uniprot):Hoch_5815
Chain IDs:A, B, C, D, E, F, G, H
Chain Length:99
Number of Molecules:8
Biological Source:Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2)
Primary Citation
Visualization of Bacterial Microcompartment Facet Assembly Using High-Speed Atomic Force Microscopy.
Nano Lett. 16 1590 1595 (2016)
PMID: 26617073 DOI: 10.1021/acs.nanolett.5b04259

Abstact

Bacterial microcompartments (BMCs) are proteinaceous organelles widespread among bacterial phyla. They compartmentalize enzymes within a selectively permeable shell and play important roles in CO2 fixation, pathogenesis, and microbial ecology. Here, we combine X-ray crystallography and high-speed atomic force microscopy to characterize, at molecular resolution, the structure and dynamics of BMC shell facet assembly. Our results show that preformed hexamers assemble into uniformly oriented shell layers, a single hexamer thick. We also observe the dynamic process of shell facet assembly. Shell hexamers can dissociate from and incorporate into assembled sheets, indicating a flexible intermolecular interaction. Furthermore, we demonstrate that the self-assembly and dynamics of shell proteins are governed by specific contacts at the interfaces of shell proteins. Our study provides novel insights into the formation, interactions, and dynamics of BMC shell facets, which are essential for the design and engineering of self-assembled biological nanoreactors and scaffolds based on BMC architectures.

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