5DIS image
Deposition Date 2015-09-01
Release Date 2015-11-04
Last Version Date 2024-01-10
Entry Detail
PDB ID:
5DIS
Title:
Crystal structure of a CRM1-RanGTP-SPN1 export complex bound to a 113 amino acid FG-repeat containing fragment of Nup214
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.85 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
C 2 2 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Exportin-1
Gene (Uniprot):XPO1
Chain IDs:A
Chain Length:1044
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:GTP-binding nuclear protein Ran
Gene (Uniprot):RAN
Mutagens:Q69L
Chain IDs:B
Chain Length:172
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Snurportin-1
Gene (Uniprot):SNUPN
Chain IDs:C
Chain Length:289
Number of Molecules:1
Biological Source:Homo sapiens
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Maltose-binding periplasmic protein,Nuclear pore complex protein Nup214
Gene (Uniprot):malE, NUP214
Chain IDs:D
Chain Length:479
Number of Molecules:1
Biological Source:Escherichia coli (strain K12), Homo sapiens
Peptide-like Molecules
PRD_900001
Primary Citation
Structural and Functional Characterization of CRM1-Nup214 Interactions Reveals Multiple FG-Binding Sites Involved in Nuclear Export.
Cell Rep 13 690 702 (2015)
PMID: 26489467 DOI: 10.1016/j.celrep.2015.09.042

Abstact

CRM1 is the major nuclear export receptor. During translocation through the nuclear pore, transport complexes transiently interact with phenylalanine-glycine (FG) repeats of multiple nucleoporins. On the cytoplasmic side of the nuclear pore, CRM1 tightly interacts with the nucleoporin Nup214. Here, we present the crystal structure of a 117-amino-acid FG-repeat-containing fragment of Nup214, in complex with CRM1, Snurportin 1, and RanGTP at 2.85 Å resolution. The structure reveals eight binding sites for Nup214 FG motifs on CRM1, with intervening stretches that are loosely attached to the transport receptor. Nup214 binds to N- and C-terminal regions of CRM1, thereby clamping CRM1 in a closed conformation and stabilizing the export complex. The role of conserved hydrophobic pockets for the recognition of FG motifs was analyzed in biochemical and cell-based assays. Comparative studies with RanBP3 and Nup62 shed light on specificities of CRM1-nucleoporin binding, which serves as a paradigm for transport receptor-nucleoporin interactions.

Legend

Protein

Chemical

Disease

Primary Citation of related structures