5DG6 image
Deposition Date 2015-08-27
Release Date 2016-02-10
Last Version Date 2024-11-20
Entry Detail
PDB ID:
5DG6
Title:
2.35A resolution structure of Norovirus 3CL protease in complex an oxadiazole-based, cell permeable macrocyclic (21-mer) inhibitor
Biological Source:
Source Organism:
Norwalk virus (Taxon ID: 524364)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.35 Å
R-Value Free:
0.27
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:3C-LIKE PROTEASE
Gene (Uniprot):ORF1
Chain IDs:A, B
Chain Length:188
Number of Molecules:2
Biological Source:Norwalk virus
Peptide-like Molecules
PRD_002187
Primary Citation
Oxadiazole-Based Cell Permeable Macrocyclic Transition State Inhibitors of Norovirus 3CL Protease.
J.Med.Chem. 59 1899 1913 (2016)
PMID: 26823007 DOI: 10.1021/acs.jmedchem.5b01464

Abstact

Human noroviruses are the primary causative agents of acute gastroenteritis and a pressing public health burden worldwide. There are currently no vaccines or small molecule therapeutics available for the treatment or prophylaxis of norovirus infections. Norovirus 3CL protease plays a vital role in viral replication by generating structural and nonstructural proteins via the cleavage of the viral polyprotein. Thus, molecules that inhibit the viral protease may have potential therapeutic value. We describe herein the structure-based design, synthesis, and in vitro and cell-based evaluation of the first class of oxadiazole-based, permeable macrocyclic inhibitors of norovirus 3CL protease.

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