5DDJ image
Deposition Date 2015-08-25
Release Date 2015-09-23
Last Version Date 2024-01-10
Entry Detail
PDB ID:
5DDJ
Keywords:
Title:
Crystal structure of recombinant foot-and-mouth-disease virus O1M-S2093Y empty capsid
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.50 Å
R-Value Work:
0.36
Space Group:
I 2 3
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Foot and mouth disease virus, VP1
Chain IDs:A (auth: 1)
Chain Length:211
Number of Molecules:1
Biological Source:Foot-and-mouth disease virus - type O
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Foot and mouth disease virus, VP2
Mutagens:S93Y
Chain IDs:B (auth: 2)
Chain Length:218
Number of Molecules:1
Biological Source:Foot-and-mouth disease virus - type O
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Foot and mouth disease virus, VP3
Chain IDs:C (auth: 3)
Chain Length:220
Number of Molecules:1
Biological Source:Foot-and-mouth disease virus - type O
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Genome polyprotein
Chain IDs:D (auth: 4)
Chain Length:85
Number of Molecules:1
Biological Source:Foot-and-mouth disease virus - type O
Ligand Molecules
Primary Citation
Structure-based energetics of protein interfaces guides foot-and-mouth disease virus vaccine design.
Nat.Struct.Mol.Biol. 22 788 794 (2015)
PMID: 26389739 DOI: 10.1038/nsmb.3096

Abstact

Virus capsids are primed for disassembly, yet capsid integrity is key to generating a protective immune response. Foot-and-mouth disease virus (FMDV) capsids comprise identical pentameric protein subunits held together by tenuous noncovalent interactions and are often unstable. Chemically inactivated or recombinant empty capsids, which could form the basis of future vaccines, are even less stable than live virus. Here we devised a computational method to assess the relative stability of protein-protein interfaces and used it to design improved candidate vaccines for two poorly stable, but globally important, serotypes of FMDV: O and SAT2. We used a restrained molecular dynamics strategy to rank mutations predicted to strengthen the pentamer interfaces and applied the results to produce stabilized capsids. Structural analyses and stability assays confirmed the predictions, and vaccinated animals generated improved neutralizing-antibody responses to stabilized particles compared to parental viruses and wild-type capsids.

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Primary Citation of related structures
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