5DDH image
Deposition Date 2015-08-24
Release Date 2016-07-27
Last Version Date 2024-11-06
Entry Detail
PDB ID:
5DDH
Keywords:
Title:
Structure of HLA-A2:01 with the 12-mer peptide F12K
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Toxoplasma gondii (Taxon ID: 5811)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.50 Å
R-Value Free:
0.21
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:HLA class I histocompatibility antigen, A-2 alpha chain
Chain IDs:A
Chain Length:274
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Beta-2-microglobulin
Gene (Uniprot):B2M
Chain IDs:B
Chain Length:99
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:12-mer peptide F12K
Chain IDs:C
Chain Length:12
Number of Molecules:1
Biological Source:Toxoplasma gondii
Ligand Molecules
Primary Citation
Toxoplasma gondii peptide ligands open the gate of the HLA class I binding groove.
Elife 5 ? ? (2016)
PMID: 26824387 DOI: 10.7554/eLife.12556

Abstact

HLA class I presentation of pathogen-derived peptide ligands is essential for CD8+ T-cell recognition of Toxoplasma gondii infected cells. Currently, little data exist pertaining to peptides that are presented after T. gondii infection. Herein we purify HLA-A*02:01 complexes from T. gondii infected cells and characterize the peptide ligands using LCMS. We identify 195 T. gondii encoded ligands originating from both secreted and cytoplasmic proteins. Surprisingly, T. gondii ligands are significantly longer than uninfected host ligands, and these longer pathogen-derived peptides maintain a canonical N-terminal binding core yet exhibit a C-terminal extension of 1-30 amino acids. Structural analysis demonstrates that binding of extended peptides opens the HLA class I F' pocket, allowing the C-terminal extension to protrude through one end of the binding groove. In summary, we demonstrate that unrealized structural flexibility makes MHC class I receptive to parasite-derived ligands that exhibit unique C-terminal peptide extensions.

Legend

Protein

Chemical

Disease

Primary Citation of related structures