5DD6 image
Entry Detail
PDB ID:
5DD6
Keywords:
Title:
Crystal structures in an anti-HIV antibody lineage from immunization of Rhesus macaques
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2015-08-24
Release Date:
2016-05-11
Method Details:
Experimental Method:
Resolution:
1.70 Å
R-Value Free:
0.22
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:ANTI-HIV ANTIBODY DH570.mut58 FAB HEAVY CHAIN
Chain IDs:A (auth: H), C (auth: A)
Chain Length:233
Number of Molecules:2
Biological Source:Macaca mulatta
Polymer Type:polypeptide(L)
Description:ANTI-HIV ANTIBODY DH570.mut58 FAB LIGHT CHAIN
Chain IDs:B (auth: L), D (auth: B)
Chain Length:214
Number of Molecules:2
Biological Source:Macaca mulatta
Primary Citation

Abstact

Development of an HIV vaccine is a global priority. A major roadblock to a vaccine is an inability to induce protective broadly neutralizing antibodies (bnAbs). HIV gp41 bnAbs have characteristics that predispose them to be controlled by tolerance. We used gp41 2F5 bnAb germline knock-in mice and macaques vaccinated with immunogens reactive with germline precursors to activate neutralizing antibodies. In germline knock-in mice, bnAb precursors were deleted, with remaining anergic B cells capable of being activated by germline-binding immunogens to make gp41-reactive immunoglobulin M (IgM). Immunized macaques made B cell clonal lineages targeted to the 2F5 bnAb epitope, but 2F5-like antibodies were either deleted or did not attain sufficient affinity for gp41-lipid complexes to achieve the neutralization potency of 2F5. Structural analysis of members of a vaccine-induced antibody lineage revealed that heavy chain complementarity-determining region 3 (HCDR3) hydrophobicity was important for neutralization. Thus, gp41 bnAbs are controlled by immune tolerance, requiring vaccination strategies to transiently circumvent tolerance controls.

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