5DBO image
Entry Detail
PDB ID:
5DBO
Keywords:
Title:
Crystal structure of the tetrameric eIF2B-beta2-delta2 complex from C. thermophilum
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2015-08-21
Release Date:
2015-10-07
Method Details:
Experimental Method:
Resolution:
3.00 Å
R-Value Free:
0.25
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
P 32 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Translation initiation factor eif-2b-like protein
Chain IDs:A, C
Chain Length:466
Number of Molecules:2
Biological Source:Chaetomium thermophilum
Polymer Type:polypeptide(L)
Description:Translation initiation factor eIF2b-like protein,Translation initiation factor eIF2b-like protein
Chain IDs:B, D
Chain Length:419
Number of Molecules:2
Biological Source:Chaetomium thermophilum
Ligand Molecules
Primary Citation
Architecture of the eIF2B regulatory subcomplex and its implications for the regulation of guanine nucleotide exchange on eIF2.
Nucleic Acids Res. 43 9994 10014 (2015)
PMID: 26384431 DOI: 10.1093/nar/gkv930

Abstact

Eukaryal translation initiation factor 2B (eIF2B) acts as guanine nucleotide exchange factor (GEF) for eIF2 and forms a central target for pathways regulating global protein synthesis. eIF2B consists of five non-identical subunits (α-ϵ), which assemble into a catalytic subcomplex (γ, ϵ) responsible for the GEF activity, and a regulatory subcomplex (α, β, δ) which regulates the GEF activity under stress conditions. Here, we provide new structural and functional insight into the regulatory subcomplex of eIF2B (eIF2B(RSC)). We report the crystal structures of eIF2Bβ and eIF2Bδ from Chaetomium thermophilum as well as the crystal structure of their tetrameric eIF2B(βδ)2 complex. Combined with mutational and biochemical data, we show that eIF2B(RSC) exists as a hexamer in solution, consisting of two eIF2Bβδ heterodimers and one eIF2Bα2 homodimer, which is homologous to homohexameric ribose 1,5-bisphosphate isomerases. This homology is further substantiated by the finding that eIF2Bα specifically binds AMP and GMP as ligands. Based on our data, we propose a model for eIF2B(RSC) and its interactions with eIF2 that is consistent with previous biochemical and genetic data and provides a framework to better understand eIF2B function, the molecular basis for Gcn(-), Gcd(-) and VWM/CACH mutations and the evolutionary history of the eIF2B complex.

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