5D92 image
Deposition Date 2015-08-18
Release Date 2015-11-04
Last Version Date 2023-09-27
Entry Detail
PDB ID:
5D92
Title:
Structure of a phosphatidylinositolphosphate (PIP) synthase from Renibacterium Salmoninarum
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.62 Å
R-Value Free:
0.29
R-Value Work:
0.28
R-Value Observed:
0.28
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:AF2299 protein,Phosphatidylinositol synthase
Gene (Uniprot):RSal33209_2010, AF_2299
Chain IDs:A (auth: D), B (auth: A), C (auth: B), D (auth: C)
Chain Length:342
Number of Molecules:4
Biological Source:Archaeoglobus fulgidus, Renibacterium salmoninarum
Primary Citation
Structural basis for phosphatidylinositol-phosphate biosynthesis.
Nat Commun 6 8505 8505 (2015)
PMID: 26510127 DOI: 10.1038/ncomms9505

Abstact

Phosphatidylinositol is critical for intracellular signalling and anchoring of carbohydrates and proteins to outer cellular membranes. The defining step in phosphatidylinositol biosynthesis is catalysed by CDP-alcohol phosphotransferases, transmembrane enzymes that use CDP-diacylglycerol as donor substrate for this reaction, and either inositol in eukaryotes or inositol phosphate in prokaryotes as the acceptor alcohol. Here we report the structures of a related enzyme, the phosphatidylinositol-phosphate synthase from Renibacterium salmoninarum, with and without bound CDP-diacylglycerol to 3.6 and 2.5 Å resolution, respectively. These structures reveal the location of the acceptor site, and the molecular determinants of substrate specificity and catalysis. Functional characterization of the 40%-identical ortholog from Mycobacterium tuberculosis, a potential target for the development of novel anti-tuberculosis drugs, supports the proposed mechanism of substrate binding and catalysis. This work therefore provides a structural and functional framework to understand the mechanism of phosphatidylinositol-phosphate biosynthesis.

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Primary Citation of related structures