ISDA

Deposition Date 2015-08-17

Release Date 2016-08-24

Last Version Date 2025-04-09

Entry Detail

PDB ID:

5D8H

Keywords:

RIBOSOMAL PROTEIN

Title:

CRYSTAL STRUCTURE OF THE BASE OF THE RIBOSOMAL P STALK FROM METHANOCOCCUS JANNASCHII WITH ANTIBIOTIC THIOSTREPTON

Biological Source:

Source Organism:

Methanocaldococcus jannaschii (Taxon ID: 2190)
Streptomyces azureus (Taxon ID: 146537)

Host Organism:

Escherichia coli BL21(DE3)

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.80 Å

R-Value Free:

0.24

R-Value Work:

0.20

R-Value Observed:

0.20

Space Group:

I 2 2 2

Download Validation Report

Macromolecular Entities

Polymer Type:polyribonucleotide
Molecule:23S ribosomal RNA
Chain IDs:A
Chain Length:74
Number of Molecules:1
Biological Source:Methanocaldococcus jannaschii

Protein Blast

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L10
Gene (Uniprot):rpl10
Mutations:Met changed to SeMet
Chain IDs:B
Chain Length:213
Number of Molecules:1
Biological Source:Methanocaldococcus jannaschii

UniProt ID:P54049 Pfam ID:PF00466, PF17777

Protein Blast

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L11
Gene (Uniprot):rpl11
Chain IDs:C
Chain Length:161
Number of Molecules:1
Biological Source:Methanocaldococcus jannaschii

UniProt ID:P54030 Pfam ID:PF03946, PF00298

Protein Blast

Polymer Type:polypeptide(L)
Molecule:THIOSTREPTON
Gene (Uniprot):tpdA
Chain IDs:D
Chain Length:19
Number of Molecules:1
Biological Source:Streptomyces azureus

UniProt ID:P0C8P8

Modified Residue